##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index7_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	21921007	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.98612102993261	33.0	31.0	34.0	30.0	34.0
2	32.11315269412577	33.0	31.0	34.0	30.0	34.0
3	32.18005637241026	34.0	31.0	34.0	30.0	34.0
4	35.69120250725708	37.0	35.0	37.0	33.0	37.0
5	35.64720133523063	37.0	35.0	37.0	33.0	37.0
6	35.618775268855124	37.0	35.0	37.0	33.0	37.0
7	35.636129763564234	37.0	35.0	37.0	33.0	37.0
8	35.62295956568054	37.0	35.0	37.0	33.0	37.0
9	37.297272657227836	39.0	37.0	39.0	34.0	39.0
10-14	37.47868949633563	39.2	37.2	39.4	33.4	39.4
15-19	38.40582388391191	40.0	38.0	41.0	33.4	41.0
20-24	38.21629187929186	40.0	38.0	41.0	33.0	41.0
25-29	37.89786435449795	40.0	37.6	41.0	32.6	41.0
30-34	37.70113794498583	40.0	37.0	41.0	32.0	41.0
35-39	37.68062123240962	40.0	37.0	41.0	31.8	41.0
40-44	37.3709266458425	39.6	36.4	41.0	31.0	41.0
45-49	36.91984096351048	39.0	35.2	40.8	30.6	41.0
50-54	36.59294141916017	38.8	35.0	40.4	30.0	41.0
55-59	36.303964804171635	38.2	35.0	40.2	30.0	41.0
60-64	35.499120300449704	37.0	34.2	40.0	28.8	41.0
65-69	34.61957935600312	35.6	33.8	39.0	28.0	41.0
70-74	33.70176286153277	35.0	33.0	37.8	26.4	39.8
75-79	32.735726173528434	35.0	32.2	36.4	25.8	38.8
80-84	31.76784779093406	34.8	31.6	35.2	24.4	37.0
85-89	30.662613774996743	34.0	31.0	35.0	19.8	36.0
90	29.7259156935628	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	265.0
11	2396.0
12	7517.0
13	14940.0
14	23403.0
15	32479.0
16	40047.0
17	47346.0
18	54481.0
19	63351.0
20	74107.0
21	86799.0
22	101187.0
23	118794.0
24	142648.0
25	170418.0
26	205486.0
27	247882.0
28	301451.0
29	368412.0
30	452968.0
31	563080.0
32	711531.0
33	922840.0
34	1260141.0
35	1827533.0
36	2825997.0
37	4103952.0
38	4587271.0
39	2507598.0
40	54687.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.36420950004715	11.850910863720813	9.898518804359673	54.88636083187237
2	20.96377764374932	18.70038222442021	36.71954454251232	23.616295589318156
3	25.503815739667125	21.091971434003774	22.339308056204974	31.06490477012413
4	27.67002460894658	27.08968959483937	19.03605458721745	26.204231208996593
5	29.34379686827825	29.594956757616742	21.600795613482855	19.46045076062215
6	24.463952411262927	32.39651416917163	21.91619687929305	21.22333654027239
7	21.608561474459933	18.700713395371416	37.36894622250855	22.321778907660104
8	21.469966641438372	22.101916503361018	29.325518508077487	27.102598347123124
9	21.42553432216999	20.958814490934042	31.80976543110748	25.805885755788488
10-14	24.524821477771102	26.110207544708743	24.645117851200933	24.719853126319222
15-19	24.91062395890064	25.071668586749695	25.045977654089548	24.971729800260114
20-24	24.67370357662896	25.326800568865913	25.444380985478794	24.555114869026333
25-29	24.494412392494265	25.367857054678954	25.398570697885102	24.73915985494168
30-34	24.572197078149337	25.28394046072523	25.303038418466457	24.84082404265898
35-39	24.5780557367413	25.453318618030547	25.28232836171323	24.68629728351492
40-44	24.529868520754707	25.28537898421437	25.430292186745145	24.75446030828578
45-49	24.48033975861663	25.34527490967014	25.339377336322677	24.83500799539055
50-54	24.508835872361175	25.43986941631598	25.38450459405219	24.666790117270654
55-59	24.51922038211428	25.373218921135464	25.336643357378367	24.77091733937189
60-64	24.440383674763094	25.3814344310793	25.439620109760302	24.73856178439731
65-69	24.46501463986628	25.507596373261084	25.428755690702438	24.598633296170203
70-74	24.529060086565615	25.440810368297047	25.32366713475238	24.70646241038496
75-79	24.521797733933443	25.391660015144314	25.394266761665257	24.692275489256986
80-84	24.456305811737057	25.53046371896202	25.409609435560863	24.60362103374006
85-89	24.57315984380333	25.50888808715136	25.29712773986282	24.620824329182494
90	24.313801995946097	25.604614846879937	25.51640019240695	24.565182964767015
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.2505703319195
2	44.58007323306747
3	56.56872050979125
4	53.87425581794317
5	48.8042476289004
6	45.687288951535315
7	43.930340382120036
8	48.572564988561496
9	47.23142007795848
10-14	49.24467460409033
15-19	49.88235375916075
20-24	49.22881844565529
25-29	49.233572247435944
30-34	49.41302112080832
35-39	49.26435302025622
40-44	49.28432882904048
45-49	49.31534775400718
50-54	49.175625989631826
55-59	49.29013772148617
60-64	49.1789454591604
65-69	49.06364793603648
70-74	49.23552249695057
75-79	49.21407322319043
80-84	49.059926845477115
85-89	49.19398417298582
90	48.87898496071311
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	62.0
1	33.0
2	5.0
3	4.0
4	2.5
5	6.5
6	14.0
7	25.0
8	35.0
9	53.5
10	69.0
11	92.0
12	141.5
13	214.5
14	366.5
15	621.0
16	1120.5
17	1893.0
18	3291.5
19	5933.0
20	7598.0
21	10250.0
22	17267.0
23	27833.0
24	42468.0
25	62939.0
26	88875.5
27	121396.0
28	157476.0
29	195910.5
30	216886.0
31	238430.0
32	282060.5
33	330763.0
34	382985.0
35	433668.0
36	487466.5
37	546683.5
38	598477.0
39	642511.5
40	665248.0
41	679863.5
42	709061.0
43	735228.5
44	751830.0
45	759414.5
46	758416.0
47	752154.5
48	751145.0
49	751529.5
50	750229.0
51	742136.5
52	733851.5
53	723230.0
54	716426.0
55	715967.0
56	703456.0
57	688990.5
58	668549.5
59	640494.5
60	626842.0
61	609702.5
62	573663.5
63	528395.0
64	475023.5
65	422550.0
66	366998.0
67	310088.0
68	258896.0
69	208989.5
70	183446.0
71	161164.0
72	120308.5
73	86511.5
74	58399.5
75	36208.0
76	20960.5
77	11172.5
78	5232.0
79	2159.5
80	1184.0
81	840.0
82	339.5
83	139.5
84	70.5
85	36.5
86	23.5
87	14.0
88	9.5
89	7.5
90	5.0
91	4.5
92	4.0
93	3.0
94	2.0
95	1.5
96	1.0
97	0.5
98	0.0
99	0.5
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008881891237934461
3	0.04525795735569994
4	0.045025303810176234
5	0.045002494639046466
6	0.008535191836761878
7	0.014994749100714213
8	0.011386338227983779
9	0.00751334097014795
10-14	0.010528713393504231
15-19	0.009076225375960147
20-24	0.012459281637928404
25-29	0.005048125754441846
30-34	0.01109894267174861
35-39	0.0068993180833344025
40-44	0.001993521556742352
45-49	5.77528213005908E-4
50-54	0.001042835304053322
55-59	0.0016449974218793871
60-64	6.797132996673008E-4
65-69	0.007357326239620288
70-74	0.003023583724963
75-79	0.004390309259059129
80-84	0.0017964503181810945
85-89	0.0012937361864808492
90	0.013138082570750515
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.1921007E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	55.57759452878487
#Duplication Level	Relative count
1	100.0
2	32.29471863343964
3	17.216065733282882
4	10.822206605762474
5	7.485810043786151
6	5.550570301097356
7	4.2326612249310775
8	3.3893723985080273
9	2.767717173901292
10++	32.468782096329534
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4613680	2.588783	5.5804935	1
GAAGA	4644300	2.5853167	5.1064606	2
CCTGG	4591070	2.5566514	6.268724	1
CTTCT	4873850	2.5381637	6.1476994	1
AAGAA	4674505	2.5355058	5.030546	2
CTGGA	4432605	2.4586084	9.662326	1
TCCAG	4369280	2.3708441	6.007192	2
CTGCT	4352380	2.3438478	5.51474	1
CTCCT	4364935	2.2995512	8.356548	1
CTGGG	4010975	2.2832048	9.180672	1
CAGGA	4020900	2.2472122	5.7393646	1
CTTCA	4229355	2.2192802	6.2766156	1
CTCCA	4119410	2.1867085	8.854171	1
CCCAG	3951815	2.1692398	7.761901	1
CAGAA	3882825	2.1144826	5.243854	1
CTCTG	3771470	2.0310152	6.938421	1
CTGCA	3675550	1.9944146	5.2684264	1
CTTCC	3722315	1.9610039	5.1064773	1
CTGGC	3380050	1.882265	5.908937	1
TGGAA	3396375	1.8763704	5.3628416	2
CTGAA	3444230	1.8614779	6.1232615	1
CTTTT	3534985	1.8197727	5.221451	1
CTCAG	3213070	1.7434653	6.695934	1
CTGAG	3141785	1.7426364	5.344126	1
CTTTG	3203645	1.7054111	5.4802403	1
CTGGT	3027420	1.6665274	5.4484653	1
CTTGG	2990270	1.6460772	5.801751	1
CTCCC	2886915	1.5385698	5.6481533	1
>>END_MODULE
